Plasmid_Backbone

Part:BBa_K260010

Designed by: Kaj Bernhardt   Group: iGEM09_BIOTEC_Dresden   (2009-10-18)

pMA-BsdR-@CC2FosM

DESCRIPTION: This plasmid backbone is based on pMA from Geneart. It has BioBrick prefix and suffix flanked on both sides by 70 bp of homology arms and a codon-optimised blasticidin resistance cassette (BsdR) for insertion of the contained BioBrick into the proper locus of pCC2FosM (BBa_K260000) by recombineering using the HincII fragment including the BioBrick. The product of this reaction is the pCC2FosMB backbone (BBa_K260001), which then contains the same BioBrick that was inside the present backbone BBa_K260010 before, with BioBrick prefix and sufix maintained intact. Initially this was done with the TT_FRT_GFP BioBrick (BBa_K260016), which is depicted below, using BBa_K260010-BBa_K260016. PMA-TT FRT GFP BsdR.jpg


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 3076
    Illegal NheI site found at 3014
    Illegal SpeI site found at 2
    Illegal PstI site found at 16
    Illegal NotI site found at 9
    Illegal NotI site found at 3082
  • 21
    INCOMPATIBLE WITH RFC[21]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 3076
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found at 3076
    Illegal suffix found at 2
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found at 3076
    Plasmid lacks a suffix.
    Illegal XbaI site found at 3091
    Illegal SpeI site found at 2
    Illegal PstI site found at 16
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.


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Categories
Parameters
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